Kinemages and Kinemage Documentation

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Listing of Our Kinemages and Kinemage Documentation

On this page, you'll find:: Tutorials & Demos; The Protein Tourist Series; Kinemages Having Nothing to do with Molecular Structure; Kinemages for Branden and Tooze; The files in each category bundled together as a download package
The individual items may be downloaded to your computer by clicking on the item. Or, you may find it more convenient to choose from the bundles in the table at the bottom of this page. There you will find a package for each of the four categories, the package contains all items listed in that category. Each package is available for the Windows OS (.zip format), for the Macintosh OS (.sit format), and for unix/linus (.tar.Z format).

Tutorials, Demos & Helps: Demo5_4a.kin - The initial demonstrations for new users of kinemages.; Demo5_4b.kin - A continuation of demo5_4a.kin.; Make_kin.txt - An introductory tutorial for making kinemages using ricin as the example protein.; MageHelp.txt - Printout of the Help Listing from Mage 5.4; Mage_5_4.txt - Complete documentation to accompany the Mage viewer, version 5.4; Pkin_5_4.txt - Documentation to accompany the Prekin utility, version 5.4; KinFmt54.txt - The master document explaining the format of kinemages

The Protein Tourist Series: ProTour1.kin - Doubly-Wound Parallel Alpha/Beta Proteins, or Nucleotide-Binding Domains; ProTour2.kin - Coiled-Coil Structure of the Leucine Zipper Peptide from Transcription Factor GCN4; ProTour3.kin - Protein-DNA Interactions in the Lambda Repressor/Operator Complex; ProTour4.kin - A Survey of Proteins in the 'Small Irregular' Category of Tertiary Structure; ProTour5.kin - Structure and Function of Zinc Proteases; ProTour6.kin - Serine Proteases; ProTour7.kin - Examples of Proteins from the Commonest Tertiary-Structure Types; ProTour8.kin - The T-R, Deoxy-Oxy Transition in Human Hemoglobin; ProTour9.kin - A Tour of the All-Beta Parallel Coil Structure of Pectate Lyase C; NATour.kin - A Sampling of DNA Dodecamer Structures

Kinemages Having Nothing to do with Molecular Structure: DomeKit.kin - Geodesic Dome Construction Kit; WorldMap.kin - Earth Globe Map; vulture.kin - Actual 3-D Flight Path of a Vulture; widget.kin - Strange Geometric Figure; consternation.kin - Movement Along a Geologic Fault

Kinemage Supplement to "An Introduction to Protein Structure", 2nd Edition, by Branden and Tooze: Table of Contents - Listing of All Kinemages in this Supplement; Chapter 1 - The Building Blocks; Chapter 2 - Motifs of Protein Structure; Chapter 3 - Alpha-Domain Structures; Chapter 4 - Alpha/Beta Structures; Chapter 5 - Antiparallel Beta Structures; Chapter 6 - Folding and Flexibility; Chapter 7 - DNA Structures; Chapter 8 - DNA Recognition in Procaryotes by Helix-Turn-Helix Motifs; Chapter 9 - DNA Recognition by Eucaryotic Transcription Factors; Chapter 10 - Specific Transcription Factors Belong to a Few Families; Chapter 11 - An Example of Enzyme Catalysis: Serine Proteases; Chapter 12 - Membrane Proteins; Chapter 13 - Signal Transduction; Chapter 14 - Fibrous Proteins; Chapter 15 - Recognition of Foreign Molecules by the Immune System; Chapter 16 - The Structure of Spherical Viruses; Chapter 17 - Prediction, Engineering, and Design of Protein Structures; Chapter 18 - Determination of Protein Structures