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Rotamer Kinemages & Coordinates

Proline rotamers Below is a list of kinemages and PDB files, one of each for each amino acid type, which show sidechain rotamer conformations. Click on the downward-pointing arrow in the column to download the PDB (with hydrogens added by Reduce) or a kinemage containing the rotamers for that amino acid. If desired, you can also download a compressed tar file containing all 20 kinemages or PDBs from the links given at the bottom of the table. Clicking on the rightmost column arrow will cause a new browser window to open and display the kinemage using MageJava (your browser must be java-capable). Most of the kins allow you to animate through each rotamer. The PDB files were used for making O and XtalView rotamer files, and may conceivably have other uses. Each structure is in idealized Engh and Huber geometry.




Rotamer for amino acid: Download: View in
JavaMage
coordinate
file		 kinemage
file
  ALA   alanine (only one structure) [download] [download] display javamage
  ARG   arginine rotamers [download] [download] display javamage
  ASN   asparagine rotamers [download] [download] display javamage
  ASP   aspartic acid rotamers [download] [download] display javamage
  CYS   cysteine rotamers [download] [download] display javamage
  GLN   glutamine rotamers [download] [download] display javamage
  GLU   glutamic acid rotamers [download] [download] display javamage
  HIS   histidine rotamers [download] [download] display javamage
  ILE   isoleucine rotamers [download] [download] display javamage
  LEU   leucine rotamers [download] [download] display javamage
  LYS   lysine rotamers [download] [download] display javamage
  MET   methionine rotamers [download] [download] display javamage
  PHE   phenylanine rotamers [download] [download] display javamage
  PRO   proline rotamers [download] [download] display javamage
  SER   serine rotamers [download] [download] display javamage
  THR   threonine rotamers [download] [download] display javamage
  TRP   tryptophan rotamers [download] [download] display javamage
  TYR   tyrosine rotamers [download] [download] display javamage
  VAL   valine rotamers [download] [download] display javamage


These compressed files contain either all 19 rotamer PDBs or kinemages listed in the table above.

PDB files: Kinemages:
rotpdbs.tgz (unix line-feeds) rotkins.tgz (unix line-feeds)
rotpdbs.tar.Z (unix line-feeds) rotkins.tar.Z (unix line-feeds)
rotpdbs.zip (Windows/Dos line feeds) rotkins.zip (Windows/Dos line feeds)
rotpdbs.sit (Macintosh line feeds) rotkins.sit (Macintosh line feeds)


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